All publications

This is the complete list of peer-reviewed publications in which I’m a co-autor.
Here you can find it as Google Scholar entry.

• I. Ferrari, S. Mazzara, A. Gobbini, N. Di Marzo, M. Crosti, S. Abrignani, R. Grifantini, M. Bombaci, R.L. Rossi. Single cell RNAseq signatures refined with combiroc enhance identification of NK cells in blood and solid tissues. Scientific Reports (2026)
• M. Bombaci, I. Ferrari, S. Mazzara, R.L. Rossi. Refinement of single-cell RNA-seq gene expression signatures with combiroc. In: S., Barciszewski, J. (eds), Systems Biology II. RNA Technologies (2024), vol 14. Springer.
• R.L. Rossi, D. Elia, O. Torre, R. Cassandro, A. Caminati, C. Vasco, E. Carelli, S. Abrignani, J. Geginat, S. Harari. Identification of serum microRNAs associated with Lymphangioleiomyomatosis. American Journal of Respiratory Cell and Molecular Biology (2023)
• G.E. Phad, D. Pinto, M. Foglierini1, M. Akhmedov, R.L. Rossi, E. Malvicini, A. Cassotta, C. Silacci Fregni, L. Bruno, F. Sallusto, A. Lanzavecchia. Clonal structure, stability and dynamics of human memory B cells and circulating plasmablasts. Nature Immunology (2022)
• B. Hagos, A.U. Akarca, A. Ramsay, R.L. Rossi, S. Pomplun, A. Moioli, A. Gianatti, A. Rambaldi, S.A. Quezada, D. Linch, G. Gritti, Y. Yuan, T. Marafioti. High inter-follicular spatial co-localisation of CD8+FOXP3+ with CD4+CD8+ cells predicts favourable outcome in follicular lymphoma. Hematological Oncology. 22 April 2022
• Iennaco ⁼, G. Formenti ⁼, C. Trovesi ⁼, R.L. Rossi ⁼, C. Zuccato ⁼, V. Dickinson Bocchi, C. Martínez-Labarga, O. Rickards, M. Pacifico, A. Crottini, A. Pape Møller, D. S. Horner, N. Saino, E. Cattaneo. The evolutionary history of the polyQ tract in huntingtin sheds light on its functional pro-neural activities. Cell Death and Differentiation. 1 January 2022 (2022).
• Cheroni, L. Manganaro, L. Donnici, V. Bevilacqua, R.J.P. Bonnal, R.L. Rossi ^=,c , R. De Francesco ^=,c. Novel interferon-sensitive genes unveiled by correlation-driven gene selection and systems biology. Scientific Reports 11:18043 (2021)
• Cozzolino, E. Vezzoli, C. Cheroni, D. Besusso, P. Conforti, M. Valenza, I. Iacobucci, V. Monaco, G. Birolini, M. Bombaci, A. Falqui, P. Saftig, R.L. Rossi, M. Monti, E. Cattaneo, C. Zuccato. ADAM10 hyperactivation acts on piccolo to deplete synaptic vesicle stores in Huntington’s disease. Human Molecular Genetics (2021); 30(13):1175-1187
• Fortuna, F.Vitalini, M. Signorelli, E. Furfaro, F. Marini, G. Janssenswillen, R. Porreca, R.L. Rossi, A. Guzzo, R. Sirovich. e-Rum2020: how we turned a physical conference into a successful virtual event. The R Journal (2020); 12(2):416-424. ISSN 2073-4859;
• Conforti, D. Besusso, S. Brocchetti, I. Campus, C. Cappadona, M. Galimberti, A. Laporta, R. Iennaco, R.L. Rossi, V. Bocchi Dickinson, E. Cattaneo. RUES2 hESCs exhibit MGE-biased neuronal differentiation and muHTT-dependent defective specification hinting at SP1. Neurobiology of Disease. (2020); 146:105140 DOI: 10.1016/j.nbd.2020.105140
• Manfrini, M. Mancino, A. Miluzio, S. Oliveto, M. Balestra, P. Calamita, R. Alfieri, R.L. Rossi, M. Sassoè-Pognetto, C. Salio, A. Cuomo, T. Bonaldi, M. Manfredi, E. Marengo, E. Ranzato, S. Martinotti, D. Cittaro, G. Tonon, S. Biffo. FAM46C and FNDC3A Are Multiple Myeloma Tumor Suppressors That Act in Concert to Impair Clearing of Protein Aggregates and Autophagy. Cancer Research (2020); 80(21):4693-4706
• A. Cherubini, M. Barilani, R.L. Rossi, M.M.K. Jalal, F. Rusconi, G. Buono, E. Ragni, G. Cantarella, H.A.R.W. Simpson, B. Péault, L. Lazzari. FOXP1 circular RNA sustains mesenchymal stem cell identity via microRNA inhibition. Nucleic Acids Res (2019); 47(10): 5325-5340. PMID 30937446; EID: 2-s2.0-85067215253
• M. Bombaci, R.L. Rossi c Computation and Selection of Optimal Biomarker Combinations by Integrative ROC Analysis Using CombiROC. In: Brun V., Couté Y. (eds) Proteomics for Biomarker Discovery. Methods in Molecular Biology (2019), vol 1959. Humana Press, New York, NY. ISBN 978-1-4939-9163-1; PMID 30852827;  EID: 2-s2.0-85062685559
• C. Faliti, R. Gualtierotti, E. Rottoli, M. Gerosa, L. Perruzza, A. Romagnani, G. Pellegrini, B. De Ponte Conti, R.L. Rossi, M. Idzko, E. Mazza, S. Bicciato, E. Traggiai, P.L. Meroni, and F. Grassi. P2X7 receptor restrains pathogenic Tfh cells generation in systemic lupus erythematosus. J. Exp. Med. (2019) 216(2). PMID 30655308; EID: 2-s2.0-85061114504
• P. Gruarin, S. Maglie, M. De Simone, B. Häringer, C. Vasco, V. Ranzani, R. Bosotti, J.S. Noddings, P. Larghi, F. Facciotti, M.L. Sarnicola, M. Martinovic, M. Crosti, M. Moro, R.L. Rossi, M.E. Bernardo, F. Caprioli, F. Locatelli, G. Rossetti, S. Abrignani, M. Pagani, J. Geginat. Eomesodermin controls a unique differentiation program in human IL-10 and IFN-γ coproducing regulatory T cells. Eur. J. Immunol (2019)
• R.L.Rossi c & R. Grifantini c. Big data: challenge and opportunity for translational and industrial research. Frontiers in Digital Humanities (2018) 5:13.
• G. Gritti, A. Gianatti, F. Petronzelli, R. DeSantis, C. Pavoni, R.L. Rossi, L. Cattaneo, L.G. Spagnoli, S. Ferrari, A. Rossi, A.M. Barbui, A. Rambaldi. Evaluation of tenascin-C by tenatumomab in T-cell non-Hodgkin lymphomas identifies a new target for radioimmunotherapy. Oncotarget (2018); 9, 9766-9775.
  PMID 29515769; EID: 2-s2.0-85041700291
• C. Cobolli Gigli, L. Scaramuzza, M. De Simone, R.L. Rossi, D. Pozzi, M. Pagani, N. Landsberger, F. Bedogni. Lack of Methyl-CpG Binding Protein 2 (MeCP2) Affects Cell Fate Refinement During Embryonic Cortical Development. Cerebral Cortex. (2018) 28(5):1846-1856.
  PMID 29351579; DOI: 10.1093/cercor/bhx360; EID: 2-s2.0-85052199043; WOS:000431890800023
• S. Mazzara =, R.L. Rossi =,c , R. Grifantini, S. Donizetti, S. Abrignani, M. Bombaci. CombiROC: an interactive web tool for selecting accurate marker combinations of omics data. Scientific Reports (2017) 7, 45477.
  PMID 28358118; DOI: 10.1038/srep45477; EID: 2-s2.0-85016551547; WOS:000398405200001
• A Torri, D Carpi, E Bulgheroni, MC Crosti, M Moro, P Gruarin, R.L. Rossi, G. Rossetti, D. Di Vizio, M. Hoxha, V. Bollati, C. Gagliani, C. Tacchetti, M. Paroni, J. Geginat, L. Corti, L. Venegoni, E. Berti, M. Pagani, G. Matarese, S. Abrignani, P. de Candia. Extracellular microRNA signature of human helper T cell subsets in health and autoimmunity. Journal of Biological Chemistry (2017); 292 (7): 2903-15.
  PMID 28077577; DOI: 10.1074/jbc.M116.769893; EID: 2-s2.0-85013380382; WOS:000395535100030
• M. Paroni, V. Maltese, M. De Simone, V. Ranzani, P. Larghi, C. Fenoglio, A.M. Pietroboni, M.A. De Riz, M.C. Crosti, S. Maglie, M. Moro, F. Caprioli, R.L. Rossi, G. Rossetti, D. Galimberti, M. Pagani, E. Scarpini, S. Abrignani, J. Geginat. Recognition of viral and self-antigens by TH1 and TH1/TH17 central memory cells in patients with multiple sclerosis reveals distinct roles in immune surveillance and relapse. Journal of Allergy and Clinical Immunology (2017) S0091-6749(17)
  PMID 28237728; DOI: 10.1016/j.jaci.2016.11.045; EID: 2-s2.0-85013414042; WOS:000409241500018
• L. Fagnocchi, A. Cherubini, H. Hatsuda, A. Fasciani, S. Mazzoleni, V. Poli, V. Berno, R. L. Rossi, R. Reinbold, M. Endele, T. Schroeder, M. Rocchigiani, Z. Szkarłat, S. Oliviero, S. Dalton, A. Zippo. A Myc-driven self-reinforcing regulatory network maintains mouse embryonic stem cell identity. Nature Communication 7, 11903 (2016).
  PMID 27301576; DOI: 10.1038/ncomms11903; EID: 2-s2.0-84975038181; WOS:000378685300001
• S. Mazzara, A. Sinisi, A. Cardaci, R.L. Rossi, L. Muratori, S. Abrignani, M. Bombaci . Two of Them Do It Better: Novel Serum Biomarkers Improve Autoimmune Hepatitis Diagnosis. PLoS One (2015); 10(9): e0137927.
  PMID 26375394; DOI: 10.1371/journal.pone.0137927; EID: 2-s2.0-84945977215; WOS:000361610200062
• F. Marabita, P. de Candia, A. Torri, J. Tegnér, S. Abrignani, R.L. Rossi c. Normalization of circulating microRNA expression data obtained by quantitative real-time RT-PCR. Briefings in Bioinformatics (2016); 17(2): 2014-12.
  PMID 26238539; DOI: 10.1093/bib/bbv056; EID: 2-s2.0-84963759532; WOS:000372974300003
• F. Bedogni, C. Cobolli Gigli, D. Pozzi, R.L. Rossi, L. Scaramuzza, G. Rossetti, M. Pagani, C. Kilstrup-Nielsen, M. Matteoli, N. Landsberger. Defects During Mecp2 Null Embryonic Cortex Development Precede the Onset of Overt Neurological Symptoms. Cerebral Cortex (2016); 26(6): 2517-29, Epub May2015.
  PMID 25979088; DOI: 10.1093/cercor/bhv078; EID: 2-s2.0-84974573964; WOS:000377917500013
• R.J.P. Bonnal =, R.L. Rossi = , D. Carpi, V. Ranzani, S. Abrignani, M. Pagani. miRiadne: a web tool for consistent integration of miRNA nomenclature. Nucleic Acids Research (2015) 43(W1):W487-W492.
  PMID 25897123; DOI: 10.1093/nar/gkv381; EID: 2-s2.0-84979862566; WOS:000359772700077
• F. Bedogni, R.L. Rossi, F. Galli, C. Cobolli Gigli, A. Gandaglia, C. Kilstrup-Nielsen, N. Landsberger. Rett syndrome and the urge of novel approaches to study MeCP2 functions and mechanisms of action. Neurosci Biobehav Rev. (2014); 46(2):187-201.
  PMID 24594195; DOI: 10.1016/j.neubiorev.2014.01.011; EID: 2-s2.0-84909644903; WOS:000348012600004
• P. de Candia, A. Torri, T. Gorletta, M. Fedeli, E. Bulgheroni, C. Cheroni, F. Marabita, M. Crosti, M. Moro, E. Pariani, L. Romanò, S. Esposito, F. Mosca, G. Rossetti, R.L. Rossi, J. Geginat, G. Casorati, P. Dellabona, M. Pagani, S. Abrignani. Intracellular modulation, extracellular disposal and serum increase of MiR-150 mark lymphocyte activation. PLoS One. (2013); Sep 26;8(9):e75348.
  PMID 24205408; DOI: 10.1371/journal.pone.0075348; EID: 2-s2.0-84884658821; WOS:000325220000016
• F. Bosè, L. Petti, M. Diani, C. Moscheni, S. Molteni, A. Altomare, R.L. Rossi, D. Talarico, R. Fontana, V. Russo, G. Altomare, E. Reali. Inhibition of CCR7/CCL19 axis in lesional skin is a critical event for clinical remission induced by TNF blockade in psoriasis patients. American Journal of Pathology. (2013); 183(2):413-21.
  PMID 23731727; DOI: 10.1016/j.ajpath.2013.04.021; EID: 2-s2.0-84880608647; WOS:000322611700010
• M. Pagani, G. Rossetti, I. Panzeri, P. de Candia, R.J.P. Bonnal, R.L. Rossi, J. Geginat, S. Abrignani. Role of microRNAs and Long-non-coding RNAs in CD4+ T cell differentiation. Immunological Reviews. (2013), 253(1):82-96.
  PMID 23550640; DOI: 10.1111/imr.12055; EID: 2-s2.0-84875785000; WOS:000317078800007
• F. Caprioli, F. Bosè, R.L. Rossi, L. Petti, C. Viganò, C. Ciafardini, L. Raeli, G. Basilisco, S. Ferrero, M. Pagani, D. Conte, G. Altomare, G. Monteleone, S. Abrignani, E. Reali. Reduction of CD68+ macrophages and decreased IL-1 17 expression in intestinal mucosa of patients with Inflammatory Bowel Disease strongly correlate with endoscopic response and mucosal healing following infliximab therapy. Inflammatory Bowell Diseases (2013),19(4):729-739.
  PMID 23448791; DOI: 10.1097/MIB.0b013e318280292b; EID: 2-s2.0-84876372616
• L. Novellino, R.L. Rossi, F. Bonino, D. Cavallone, S. Abrignani, M. Pagani, M.R. Brunetto. Circulating hepatitis B surface antigen particles carry hepatocellular microRNAs. PLoS One (2012),7(3):e31952.
  PMID 22470417; DOI: 10.1371/journal.pone.0031952; EID: 2-s2.0-84859060888; WOS:000304489000001
• R.L. Rossi = , G. Rossetti =, L. Wenandy =, M. Moro, R. Sciarretta Birolo, R.J.P. Bonnal, S. Curti, S. Maglie, P. Gruarin, F. Marabita, D. Mascheroni, A. Ripamonti, M. Comelli, E. Trabucchi, R. De Francesco, J. Geginat, S. Abrignani and M. Pagani. Distinct microRNA signatures in human lymphocyte subsets and enforcement of the naïve state in CD4+ T cells by the microRNA miR-125b. Nature Immunology (2011),12(8):796-803.
  PMID 21706005; DOI: 10.1038/ni.2057; EID: 2-s2.0-80052035077; WOS:000292870700018
• B.Celona, A. Weiner, F. Di Felice, F. M. Mancuso, E. Cesarini, R.L. Rossi, L.Gregory, D. Baban, G. Rossetti, P. Grianti, M. Pagani, T. Bonaldi, J. Ragoussis, N. Friedman, G. Camilloni, M.E. Bianchi and A. Agresti. Substantial Histone Reduction Modulates GenomewideNucleosomal Occupancy and Global Transcriptional Output. PLoS Biology (2011),9(6):e1001086.
  PMID 21738444; DOI: 10.1371/journal.pbio.1001086; EID: 2-s2.0-79959811626; WOS:000292191200013
• R.L. Rossi, V. Zinzalla, A. Mastriani, M. Vanoni, and L. Alberghina. Subcellular localization of the cyclin dependent kinase inhibitor Sic1 is modulated by the carbon source in budding yeast. Cell Cycle (2005),4(12) : 1798-1807.
  PMID 16294029; DOI: 10.4161/cc.4.12.2189
• Alberghina L., Rossi R.L., Porro D., Vanoni M. A modular systems biology analysis of cell cycle entrance into S-phase. In: Alberghina L., Westerhoff H. (eds) Systems Biology. Topics in Current Genetics, vol 13. Springer, Berlin, Heidelberg.
  ISBN 978-3-540-31453-0; DOI: 10.1007/b138746
• M. Vanoni, R.L. Rossi, L. Querin, L. Zinzalla, and L. Alberghina. Glucose modulation of cell size in yeast. Biochemical Society Transactions (2005),33: 294-296.
  DOI: 10.1042/BST0330294
• L. Alberghina, R.L. Rossi, L. Querin, V. Wanke, and M. Vanoni. A cell sizer network involving Cln3 and Far1 controls entrance into S-phase in the mitotic cycle of budding yeast. The Journal of Cell Biology (2004), 167(3): 433-443.
  PMID 15520229; DOI: 10.1083/jcb.200405102
• P. Coccetti =, R.L. Rossi =, F. Sternieri, D. Porro, G.L. Russo, A. Difonzo, F. Magni, M. Vanoni and L. Alberghina. Mutations of the CK2 phosphorylation site of Sic1 affect cell size and S-Cdk kinase activity in Saccharomyces cerevisiae. Molecular Microbiology (2004),51(2): 447-460.
  PMID 14756785; DOI: 10.1046/j.1365-2958.2003.03836.x
• L. Alberghina, R.L. Rossi, V. Wanke, L. Querin, M. Vanoni. Checking cell size in yeast: a systems biology approach. Italian Journal of Biochemistry (2003),52(1): 55-57.
  PMID 12833640